Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpu_03350Hypothetical protein. (236 aa)    
Predicted Functional Partners:
cpu_03360
Hypothetical protein.
     0.980
cpu_04350
Hypothetical protein.
 
 
 0.948
cpu_04400
Conserved hypothetical protein.
  
 0.932
cpu_04380
Nicotinate dehydrogenase medium molybdopterin subunit.
 
 
 0.855
cpu_04370
Aldehyde oxidase.
 
 
 0.854
cpu_04360
(2Fe-2S)-binding protein.
 
  
 0.840
cpu_04390
Hypothetical protein.
 
  
 0.807
cpu_03370
methylmalonyl-CoA carboxyltransferase.
       0.580
cpu_14850
Molybdopterin-binding protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
  
  0.530
cpu_03340
Membrane protein.
       0.492
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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