STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_03560nitrate/TMAO reductase membrane-bound tetraheme cytochrome C subunit. (423 aa)    
Predicted Functional Partners:
cpu_07680
Cytochrome c552; Belongs to the cytochrome c-552 family.
  
 0.845
cpu_24870
Hypothetical protein; Belongs to the cytochrome c-552 family.
  
 0.845
cpu_17380
Nitrate reductase.
  
  
 0.785
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
     
 0.714
cpu_00420
Hypothetical protein.
  
 0.713
cpu_06910
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.632
cpu_03900
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.631
cpu_02380
Hypothetical protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.578
cpu_02730
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.578
cpu_11960
DMSO reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.578
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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