STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_04480Cyclase. (226 aa)    
Predicted Functional Partners:
cpu_08810
Pyruvate carboxylase subunit B.
    
  0.890
cpu_04470
L-serine dehydratase, iron-sulfur-dependent subunit alpha.
       0.782
cpu_04460
L-serine dehydratase, iron-sulfur-dependent subunit beta.
       0.764
ade-2
Adenine deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.
 
     0.763
mtaD
Ethylammeline chlorohydrolase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.
       0.713
cpu_04240
Isochorismatase.
 
   
 0.644
cpu_04230
Allantoinase.
 
    0.511
cpu_20360
Aromatic ring hydroxylase.
  
  
  0.499
cpu_04430
Xanthine/uracil permease family protein.
       0.491
cpu_04490
Fis family transcriptional regulator.
       0.460
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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