STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_04520Hypothetical protein. (366 aa)    
Predicted Functional Partners:
cpu_04540
Hypothetical protein.
  0.999
cpu_08730
Homotetrameric glutamate synthase (NADPH).
  
 0.997
cpu_04530
Glutamate synthase; Belongs to the glutamate synthase family.
 
 0.994
cpu_08810
Pyruvate carboxylase subunit B.
   
 
 0.923
cpu_07410
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 0.885
cpu_04570
FMN-binding glutamate synthase family protein.
  
 0.881
cpu_01390
NADH oxidase.
    
 0.850
cpu_17720
NADH oxidase.
    
 0.850
cpu_04500
Type I glutamate--ammonia ligase.
  
 
 0.660
cpu_04560
Glutamine synthetase.
  
 
 0.625
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.