STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_04780NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing. (352 aa)    
Predicted Functional Partners:
cpu_04770
NADH dehydrogenase.
 
 0.999
cpu_04760
NADH dehydrogenase subunit E.
 0.998
cpu_04790
NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     0.992
cpu_08730
Homotetrameric glutamate synthase (NADPH).
   
 0.934
cpu_03750
Iron-sulfur protein.
  
 0.896
cpu_08740
ferredoxin-NADP+ reductase subunit alpha.
   
 0.851
cpu_12010
Dimethyl sulfoxide reductase subunit A.
 
  
 0.844
cpu_04810
4Fe-4S ferredoxin.
  
 0.835
cpu_11310
Formate dehydrogenase-N subunit alpha; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
  0.788
fdhD
Formate dehydrogenase accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
 
 0.765
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
Server load: medium (74%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.