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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_04830FAD-dependent oxidoreductase. (394 aa)    
Predicted Functional Partners:
cpu_04790
NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.966
cpu_06720
Rubredoxin.
  
 0.947
cpu_04820
Carbon-monoxide dehydrogenase catalytic subunit.
  
 
 0.891
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
 
 0.889
cpu_06270
Putative sulfite reductase, iron-sulfur binding subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
   
 0.884
cpu_04810
4Fe-4S ferredoxin.
 
  
 0.830
cpu_04770
NADH dehydrogenase.
 
  
 0.721
cpu_01390
NADH oxidase.
 
  
 0.708
cpu_17720
NADH oxidase.
 
  
 0.701
cpu_12180
MBL fold hydrolase.
 
  
 0.688
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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