STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_05690FAD-binding oxidoreductase. (455 aa)    
Predicted Functional Partners:
cpu_05700
Hypothetical protein.
 
 0.999
cpu_04050
Sn-glycerol-3-phosphate dehydrogenase subunit C.
 
 0.992
cpu_12570
Protein FixA.
  
 
 0.875
cpu_25400
Electron transfer flavoprotein subunit beta.
  
 
 0.875
cpu_05680
Lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.870
cpu_23080
Electron transfer flavoprotein subunit alpha.
 
 
 0.867
cpu_11870
Electron transfer flavoprotein subunit alpha.
  
 
 0.839
cpu_12580
Electron transfer flavoprotein subunit alpha.
  
 
 0.839
cpu_21120
Electron transfer flavoprotein subunit alpha.
  
 
 0.839
cpu_04770
NADH dehydrogenase.
   
 0.807
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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