cpu_06010 protein (Carboxydothermus pertinax)

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second shell of interactors

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Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

cpu_06010

DNA-binding protein. (206 aa)

Predicted Functional Partners:

cpu_21850

0.979

cpu_06020

0.969

rnpA

0.951

cpu_06030

0.949

rsmG

0.913

cpu_01960

0.782

mnmE

0.781

mnmG

0.758

rho

0.655

trpA

0.623

Your Current Organism:

Carboxydothermus pertinax

NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cpu_01960	cpu_06010	cpu_01960	cpu_06010	Ribonuclease E/G.	DNA-binding protein.	0.782
cpu_01960	cpu_21850	cpu_01960	cpu_21850	Ribonuclease E/G.	Hypothetical protein; Belongs to the UPF0109 family.	0.764
cpu_01960	rho	cpu_01960	cpu_13630	Ribonuclease E/G.	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.480
cpu_06010	cpu_01960	cpu_06010	cpu_01960	DNA-binding protein.	Ribonuclease E/G.	0.782
cpu_06010	cpu_06020	cpu_06010	cpu_06020	DNA-binding protein.	Membrane protein.	0.969
cpu_06010	cpu_06030	cpu_06010	cpu_06030	DNA-binding protein.	Putative membrane protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	0.949
cpu_06010	cpu_21850	cpu_06010	cpu_21850	DNA-binding protein.	Hypothetical protein; Belongs to the UPF0109 family.	0.979
cpu_06010	mnmE	cpu_06010	cpu_06000	DNA-binding protein.	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.781
cpu_06010	mnmG	cpu_06010	cpu_05990	DNA-binding protein.	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.	0.758
cpu_06010	rho	cpu_06010	cpu_13630	DNA-binding protein.	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.655
cpu_06010	rnpA	cpu_06010	cpu_06040	DNA-binding protein.	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	0.951
cpu_06010	rsmG	cpu_06010	cpu_05980	DNA-binding protein.	16S rRNA methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.913
cpu_06010	trpA	cpu_06010	cpu_11630	DNA-binding protein.	Tryptophan synthase subunit alpha; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.	0.623
cpu_06020	cpu_06010	cpu_06020	cpu_06010	Membrane protein.	DNA-binding protein.	0.969
cpu_06020	cpu_06030	cpu_06020	cpu_06030	Membrane protein.	Putative membrane protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	0.971
cpu_06020	mnmE	cpu_06020	cpu_06000	Membrane protein.	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.840
cpu_06020	mnmG	cpu_06020	cpu_05990	Membrane protein.	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.	0.878
cpu_06020	rho	cpu_06020	cpu_13630	Membrane protein.	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.813
cpu_06020	rnpA	cpu_06020	cpu_06040	Membrane protein.	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	0.978
cpu_06020	rsmG	cpu_06020	cpu_05980	Membrane protein.	16S rRNA methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.867