cpu_06980 protein (Carboxydothermus pertinax)

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Experiments

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[Homology]

Score

cpu_06980

DNA-binding response regulator. (229 aa)

Predicted Functional Partners:

cpu_06990

0.990

cpu_03310

0.983

cpu_20790

0.965

cpu_07650

0.948

cpu_10970

0.910

cpu_10420

0.909

cpu_21650

0.906

cpu_03080

0.904

cpu_10940

0.888

cpu_04770

0.884

Your Current Organism:

Carboxydothermus pertinax

NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
cpu_03080	cpu_03310	Sensory box histidine kinase.	ABC transporter substrate-binding protein.	0.819
cpu_03080	cpu_06980	Sensory box histidine kinase.	DNA-binding response regulator.	0.904
cpu_03080	cpu_06990	Sensory box histidine kinase.	Two-component sensor histidine kinase.	0.641
cpu_03080	cpu_07650	Sensory box histidine kinase.	Sensor histidine kinase.	0.763
cpu_03080	cpu_10420	Sensory box histidine kinase.	Chemotaxis protein CheA.	0.409
cpu_03080	cpu_20790	Sensory box histidine kinase.	HDIG domain-containing protein.	0.753
cpu_03310	cpu_03080	ABC transporter substrate-binding protein.	Sensory box histidine kinase.	0.819
cpu_03310	cpu_04770	ABC transporter substrate-binding protein.	NADH dehydrogenase.	0.720
cpu_03310	cpu_06980	ABC transporter substrate-binding protein.	DNA-binding response regulator.	0.983
cpu_03310	cpu_06990	ABC transporter substrate-binding protein.	Two-component sensor histidine kinase.	0.715
cpu_03310	cpu_07650	ABC transporter substrate-binding protein.	Sensor histidine kinase.	0.995
cpu_03310	cpu_10420	ABC transporter substrate-binding protein.	Chemotaxis protein CheA.	0.959
cpu_03310	cpu_10940	ABC transporter substrate-binding protein.	Chemotaxis protein CheC.	0.602
cpu_03310	cpu_10970	ABC transporter substrate-binding protein.	Flagellar motor switch phosphatase FliY.	0.973
cpu_03310	cpu_20790	ABC transporter substrate-binding protein.	HDIG domain-containing protein.	0.989
cpu_03310	cpu_21650	ABC transporter substrate-binding protein.	Two-component sensor histidine kinase.	0.821
cpu_04770	cpu_03310	NADH dehydrogenase.	ABC transporter substrate-binding protein.	0.720
cpu_04770	cpu_06980	NADH dehydrogenase.	DNA-binding response regulator.	0.884
cpu_04770	cpu_06990	NADH dehydrogenase.	Two-component sensor histidine kinase.	0.574
cpu_04770	cpu_07650	NADH dehydrogenase.	Sensor histidine kinase.	0.598