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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_073702-oxoacid:ferredoxin oxidoreductase subunit gamma. (185 aa)    
Predicted Functional Partners:
cpu_07380
2-oxoglutarate oxidoreductase.
 0.999
cpu_07390
3-methyl-2-oxobutanoate dehydrogenase subunit VorB.
 
 0.999
cpu_16730
2-oxoglutarate synthase.
 0.998
cpu_07400
2-oxoacid:acceptor oxidoreductase.
 
  
  0.976
cpu_16720
Ferredoxin oxidoreductase.
 
 0.965
cpu_24600
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
  0.908
cpu_22430
Aspartate aminotransferase.
     
 0.906
cpu_04590
Dihydrolipoyl dehydrogenase.
     
 0.904
cpu_08730
Homotetrameric glutamate synthase (NADPH).
  
 
 0.893
cpu_15160
methylmalonyl-CoA mutase.
     
 0.875
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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