STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_07480Hypothetical protein. (188 aa)    
Predicted Functional Partners:
cpu_07470
CoA-binding protein.
       0.742
cpu_07490
MFS transporter; Belongs to the major facilitator superfamily.
       0.739
cpu_07500
Hypothetical protein.
       0.695
cpu_11840
Disulfide oxidoreductase.
 
     0.492
cpu_07510
Hypothetical protein.
       0.488
cpu_07520
CoA transferase; Belongs to the CoA-transferase III family.
       0.488
tdk
Thymidine kinase.
       0.480
cpu_07430
Methylaspartate ammonia-lyase 2.
       0.466
cpu_07440
Hypothetical protein.
       0.466
cpu_07450
acyl-CoA synthetase.
       0.466
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.