STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_07680Cytochrome c552; Belongs to the cytochrome c-552 family. (414 aa)    
Predicted Functional Partners:
cpu_24700
Hypothetical protein.
 
 0.942
cpu_03560
nitrate/TMAO reductase membrane-bound tetraheme cytochrome C subunit.
  
 0.845
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.805
cpu_06710
Nitrate reductase.
  
 
 0.789
cpu_24870
Hypothetical protein; Belongs to the cytochrome c-552 family.
  
  
 
0.771
cpu_04500
Type I glutamate--ammonia ligase.
     
 0.764
cpu_04580
Glutamine synthetase.
     
 0.764
cpu_17380
Nitrate reductase.
     
 0.760
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
     
 0.564
cpu_04830
FAD-dependent oxidoreductase.
  
 
 0.513
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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