STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_07800LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (306 aa)    
Predicted Functional Partners:
cpu_07810
2-oxoglutarate translocator.
     
 0.729
cpu_15750
(2Fe-2S)-binding protein.
  
   
 0.666
cpu_03570
TetR family transcriptional regulator.
    
 
 0.643
cpu_03670
Carbon monoxide dehydrogenase.
      
 0.613
cpu_03830
Hypothetical protein.
      
 0.613
cpu_13460
Reductase.
      
 0.613
cpu_14030
(Fe-S)-binding protein.
      
 0.613
cpu_04220
MerR family transcriptional regulator.
  
  
 0.494
cpu_15250
AraC family transcriptional regulator.
  
  
 0.440
cpu_05930
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
   
0.431
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.