STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_07830Fumarate hydratase. (184 aa)    
Predicted Functional Partners:
cpu_07820
Fumarate hydratase.
 
 0.998
cpu_21300
Fumarate hydratase.
 
 0.995
cpu_07840
Succinate dehydrogenase.
  
 
 0.921
cpu_07850
(2Fe-2S)-binding protein.
  
 
 0.912
cpu_08810
Pyruvate carboxylase subunit B.
    
 0.889
cpu_21240
Malate dehydrogenase.
 
 
 0.886
cpu_21280
Fumarate reductase flavoprotein subunit.
  
 
 0.823
cpu_21290
Fumarate hydratase.
  
  
 
0.764
cpu_06220
Hypothetical protein.
  
 
 0.641
argH
Argininosuccinate lyase.
    
 0.626
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.