STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_08980Type III-A CRISPR-associated protein Cas10/Csm1. (738 aa)    
Predicted Functional Partners:
cpu_08990
Type III-A CRISPR-associated protein Csm2.
 
 
 0.998
cpu_09000
Type III-A CRISPR-associated RAMP protein Csm3.
 
 
 0.998
cpu_09010
Type III-A CRISPR-associated RAMP protein Csm4.
 
 
 0.997
cpu_09020
Type III-A CRISPR-associated RAMP protein Csm5.
 
 
 0.996
cpu_18190
Hypothetical protein.
 
 
 0.902
cpu_09030
CRISPR-associated endoribonuclease Cas6.
 
   
 0.789
cpu_15670
CRISPR-associated protein Cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).
 
   
 0.707
cpu_09060
Transcriptional regulator.
 
     0.577
cpu_17580
Hypothetical protein.
  
     0.561
cpu_15680
Type I-B CRISPR-associated protein Cas8b/Csh1.
 
     0.560
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.