STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_08990Type III-A CRISPR-associated protein Csm2. (158 aa)    
Predicted Functional Partners:
cpu_09000
Type III-A CRISPR-associated RAMP protein Csm3.
 
 
 0.999
cpu_08980
Type III-A CRISPR-associated protein Cas10/Csm1.
 
 
 0.998
cpu_09020
Type III-A CRISPR-associated RAMP protein Csm5.
 
 
 0.998
cpu_09010
Type III-A CRISPR-associated RAMP protein Csm4.
 
 
 0.997
cpu_18190
Hypothetical protein.
 
 
 0.968
cpu_09030
CRISPR-associated endoribonuclease Cas6.
 
     0.549
cpu_19390
Nucleotidyltransferase.
  
     0.509
cpu_18120
Type I-B CRISPR-associated protein Cas7/Cst2/DevR.
 
   
 0.470
cpu_09040
Hypothetical protein.
 
     0.445
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.