STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_09010Type III-A CRISPR-associated RAMP protein Csm4. (318 aa)    
Predicted Functional Partners:
cpu_09000
Type III-A CRISPR-associated RAMP protein Csm3.
 
 
 0.999
cpu_09020
Type III-A CRISPR-associated RAMP protein Csm5.
 
 
 0.998
cpu_08980
Type III-A CRISPR-associated protein Cas10/Csm1.
 
 
 0.997
cpu_08990
Type III-A CRISPR-associated protein Csm2.
 
 
 0.997
cpu_09030
CRISPR-associated endoribonuclease Cas6.
 
     0.730
cpu_09060
Transcriptional regulator.
 
     0.654
cpu_15670
CRISPR-associated protein Cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).
 
     0.641
cpu_15680
Type I-B CRISPR-associated protein Cas8b/Csh1.
 
     0.637
cpu_17580
Hypothetical protein.
  
     0.603
cpu_14610
Hypothetical protein.
  
     0.598
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.