cpu_09190 protein (Carboxydothermus pertinax)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cpu_09190

methylmalonyl-CoA mutase. (550 aa)

Predicted Functional Partners:

cpu_09180

0.999

cpu_15170

0.997

cpu_09220

0.992

cpu_15180

0.947

cpu_08810

0.878

glmS

0.865

cpu_09200

0.693

cpu_09930

0.605

cpu_23090

0.593

sucC

0.583

Your Current Organism:

Carboxydothermus pertinax

NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cpu_08810	cpu_09180	cpu_08810	cpu_09180	Pyruvate carboxylase subunit B.	methylmalonyl-CoA mutase.	0.739
cpu_08810	cpu_09190	cpu_08810	cpu_09190	Pyruvate carboxylase subunit B.	methylmalonyl-CoA mutase.	0.878
cpu_08810	cpu_09200	cpu_08810	cpu_09200	Pyruvate carboxylase subunit B.	acyl-CoA synthetase.	0.662
cpu_08810	cpu_09220	cpu_08810	cpu_09220	Pyruvate carboxylase subunit B.	GTPase.	0.446
cpu_08810	cpu_09930	cpu_08810	cpu_09930	Pyruvate carboxylase subunit B.	Hypothetical protein.	0.949
cpu_08810	cpu_15170	cpu_08810	cpu_15170	Pyruvate carboxylase subunit B.	methylmalonyl-CoA mutase.	0.739
cpu_08810	cpu_15180	cpu_08810	cpu_15180	Pyruvate carboxylase subunit B.	methylmalonyl-CoA epimerase.	0.813
cpu_08810	cpu_23090	cpu_08810	cpu_23090	Pyruvate carboxylase subunit B.	4-hydroxybutyrate CoA-transferase.	0.907
cpu_08810	glmS	cpu_08810	cpu_01530	Pyruvate carboxylase subunit B.	Glutamate mutase sigma subunit; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).	0.739
cpu_08810	sucC	cpu_08810	cpu_15140	Pyruvate carboxylase subunit B.	succinate--CoA ligase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.965
cpu_09180	cpu_08810	cpu_09180	cpu_08810	methylmalonyl-CoA mutase.	Pyruvate carboxylase subunit B.	0.739
cpu_09180	cpu_09190	cpu_09180	cpu_09190	methylmalonyl-CoA mutase.	methylmalonyl-CoA mutase.	0.999
cpu_09180	cpu_09200	cpu_09180	cpu_09200	methylmalonyl-CoA mutase.	acyl-CoA synthetase.	0.660
cpu_09180	cpu_09220	cpu_09180	cpu_09220	methylmalonyl-CoA mutase.	GTPase.	0.968
cpu_09180	cpu_09930	cpu_09180	cpu_09930	methylmalonyl-CoA mutase.	Hypothetical protein.	0.556
cpu_09180	cpu_15180	cpu_09180	cpu_15180	methylmalonyl-CoA mutase.	methylmalonyl-CoA epimerase.	0.993
cpu_09180	cpu_23090	cpu_09180	cpu_23090	methylmalonyl-CoA mutase.	4-hydroxybutyrate CoA-transferase.	0.749
cpu_09180	sucC	cpu_09180	cpu_15140	methylmalonyl-CoA mutase.	succinate--CoA ligase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.554
cpu_09190	cpu_08810	cpu_09190	cpu_08810	methylmalonyl-CoA mutase.	Pyruvate carboxylase subunit B.	0.878
cpu_09190	cpu_09180	cpu_09190	cpu_09180	methylmalonyl-CoA mutase.	methylmalonyl-CoA mutase.	0.999