STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_09770Protein PrkA. (631 aa)    
Predicted Functional Partners:
cpu_09780
Sporulation protein YhbH; Belongs to the UPF0229 family.
 
  
 0.998
cpu_09790
Stage V sporulation protein R.
 
  
 0.997
cpu_08040
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
   
  
 0.685
cpu_09800
Hypothetical protein.
       0.634
cpu_04160
Trehalose-6-phosphate synthase.
   
    0.605
cpu_04170
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.591
cpu_09760
Hypothetical protein.
       0.535
cpu_08880
Stage III sporulation protein AB.
  
    0.471
cpu_07290
Stage III sporulation protein D.
   
    0.414
cpu_19890
Nitrogen fixation nifHD region glnB 1; Belongs to the P(II) protein family.
   
  
 0.414
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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