STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_10000Succinate dehydrogenase subunit C. (287 aa)    
Predicted Functional Partners:
cpu_10010
Hypothetical protein.
 
 0.979
cpu_10020
Hydrogenase, methyl-viologen-reducing type subunit delta.
 
 0.979
cpu_09990
Hypothetical protein.
 0.977
cpu_15300
Heterodisulfide reductase, subunit A, selenocysteine-containing.
 
 0.950
cpu_15270
Heterodisulfide reductase.
 0.939
cpu_15310
Methyl viologen-reducing hydrogenase delta chain.
 
 0.933
cpu_15290
Heterodisulfide reductase, subunit A, selenocysteine-containing.
 
 0.924
cpu_15320
Dehydrogenase.
 
  
 0.832
cpu_10030
Hypothetical protein.
    
 0.719
cpu_22970
Iron hydrogenase; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
 0.717
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.