STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_10210Hypothetical protein. (299 aa)    
Predicted Functional Partners:
cpu_10220
Hypothetical protein.
 
 
 
 0.992
cpu_10230
Serine/threonine protein phosphatase.
 
     0.948
cpu_10240
Hypothetical protein.
 
   
 0.948
cpu_10260
ATPase.
 
   
 0.940
cpu_10250
Hypothetical protein.
       0.740
cpu_13150
Hypothetical protein.
  
     0.647
cpu_15680
Type I-B CRISPR-associated protein Cas8b/Csh1.
  
     0.594
cpu_10720
Flagellar protein.
  
     0.579
cpu_09020
Type III-A CRISPR-associated RAMP protein Csm5.
  
     0.558
cpu_20560
nucleotidyltransferase/HEPN domain protein.
  
     0.532
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.