STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_12180MBL fold hydrolase. (396 aa)    
Predicted Functional Partners:
cpu_06710
Nitrate reductase.
 
  
 0.909
cpu_04830
FAD-dependent oxidoreductase.
 
  
 0.688
cpu_06720
Rubredoxin.
 
  
 0.686
cpu_00120
Hemerythrin.
  
  
 0.666
cpu_12190
chain-fatty-acid-CoA ligase.
       0.584
cpu_12660
Hypothetical protein.
   
  
 0.584
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
 
  
 0.468
cpu_06690
Rubrerythrin.
 
  
 0.461
cpu_07570
Sensor domain-containing diguanylate cyclase.
    
  0.446
cpu_08270
Nucleoside recognition protein.
   
    0.443
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.