STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_12880Cytochrome ubiquinol oxidase subunit I. (444 aa)    
Predicted Functional Partners:
cpu_12890
Cytochrome D oxidase subunit I.
 
 0.999
cpu_12900
Thiol reductant ABC exporter subunit CydD.
 
  
 0.966
cpu_12910
Thiol reductant ABC exporter subunit CydC.
 
  
 0.936
cpu_12870
Transcriptional regulator.
  
  
 0.638
cpu_21270
Hypothetical protein.
     
 0.576
cpu_04770
NADH dehydrogenase.
      
 0.570
cpu_04030
Glycerol-3-phosphate dehydrogenase subunit A.
     
 0.562
cpu_07840
Succinate dehydrogenase.
     
 0.549
cpu_21250
Succinate dehydrogenase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
 0.549
cpu_04050
Sn-glycerol-3-phosphate dehydrogenase subunit C.
     
 0.506
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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