STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_12930Formylmethanofuran dehydrogenase subunit E. (201 aa)    
Predicted Functional Partners:
cpu_12940
Iron ABC transporter substrate-binding protein.
 
    0.935
cpu_12950
Iron ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.874
cooSII
Carbon-monoxide dehydrogenase, catalytic subunit.
  
  
  0.873
cpu_04820
Carbon-monoxide dehydrogenase catalytic subunit.
  
  
  0.870
cpu_12960
Iron ABC transporter ATP-binding protein.
 
    0.852
cpu_04770
NADH dehydrogenase.
    
  0.851
cpu_16630
Carbon-monoxide dehydrogenase catalytic subunit.
  
  
  0.819
cpu_09930
Hypothetical protein.
  
  
 0.707
cpu_09940
acetyl-CoA synthase subunit gamma.
  
  
  0.694
cpu_09920
Carbon-monoxide dehydrogenase catalytic subunit.
  
  
  0.682
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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