STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_129703-dehydroquinate dehydratase. (223 aa)    
Predicted Functional Partners:
cpu_00240
Transporter.
 
 
 0.939
cpu_12980
Hypothetical protein.
 
    0.923
cpu_23600
Energy-coupling factor transporter ATPase.
 
  
 
0.920
cpu_23610
Cobalt ABC transporter ATP-binding protein.
 
  
 
0.900
cpu_19250
Peptide ABC transporter ATP-binding protein.
 
   
 
0.797
cpu_17540
Hypothetical protein.
  
 0.793
cpu_07990
Sodium ABC transporter permease.
 
 
 0.642
cpu_15380
Sodium ABC transporter permease.
 
 
 0.619
cpu_20620
Hypothetical protein.
 
 
 0.566
ecfA
Cobalt ABC transporter ATPase; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
 
0.560
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.