STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_14560ABC transporter permease. (264 aa)    
Predicted Functional Partners:
cpu_14570
Hypothetical protein.
 
 0.999
cpu_14580
ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.999
cpu_14590
Transcriptional repressor; Belongs to the Fur family.
  
  
 0.901
cpu_14550
Serine protease Do.
       0.782
cpu_18310
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
    
  0.636
cpu_02110
Mn2+/Fe2_ transporter NRAMP family.
   
  
 0.608
cpu_12810
Membrane protein.
   
  
 0.608
cpu_20890
Manganese transporter.
   
  
 0.608
cpu_18940
Nickel transporter.
   
 
 0.582
cpu_05360
Hypothetical protein.
 
  
 0.545
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.