STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_14700Type IV pilin. (151 aa)    
Predicted Functional Partners:
cpu_14710
Prepilin peptidase.
  
  
 0.863
cpu_14690
Hypothetical protein.
       0.773
cpu_14760
Type II secretion system protein E.
  
 0.760
cpu_14680
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.759
cpu_14670
Hypothetical protein.
     
 0.755
cpu_14650
Hypothetical protein.
  
  
 0.732
cpu_14660
Hypothetical protein.
  
  
 0.732
cpu_14640
Hypothetical protein.
  
  
 0.725
cpu_14740
Pilus assembly protein PilC.
  
  
 0.668
cpu_05400
DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.613
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.