STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_15080Hypothetical protein. (514 aa)    
Predicted Functional Partners:
cpu_07570
Sensor domain-containing diguanylate cyclase.
 
 0.764
cpu_00130
Response regulator/sensory box protein/GGDEF domain-containing protein.
 
  
 0.750
cpu_10270
GGDEF domain-containing protein.
 
 
  0.701
cpu_12730
GGDEF domain-containing protein.
 
 
  0.675
cpu_03910
GGDEF domain-containing protein.
 
 
  0.670
cpu_04510
GGDEF domain-containing protein.
  
 
  0.666
cpu_13220
Hypothetical protein.
 
 
  0.632
cpu_02330
GGDEF domain-containing protein.
 
  
 0.620
cpu_13230
Diguanylate cyclase.
 
 
  0.619
cpu_03260
HDIG domain-containing protein.
 
 
0.579
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.