STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_15330Sulfite reductase. (342 aa)    
Predicted Functional Partners:
cpu_15340
Hydrogenase.
 
 0.998
cpu_15320
Dehydrogenase.
 
  
  0.940
cpu_05730
Hypothetical protein.
  
 0.848
cpu_15300
Heterodisulfide reductase, subunit A, selenocysteine-containing.
 
  
 0.845
cpu_15270
Heterodisulfide reductase.
 
  
 0.826
cpu_15290
Heterodisulfide reductase, subunit A, selenocysteine-containing.
 
  
 0.797
cpu_22500
Dihydroorotate dehydrogenase electron transfer subunit.
 
 
 0.794
cpu_15310
Methyl viologen-reducing hydrogenase delta chain.
 
  
 0.786
cpu_15280
Heterodisulfide reductase subunit B.
 
 0.765
cpu_17430
Sulfite reductase, dissimilatory-type subunit alpha.
   
 
 0.743
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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