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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_15500ATP-dependent helicase/deoxyribonuclease subunit B; ATP-dependent DNA helicase. (1090 aa)    
Predicted Functional Partners:
addA
Helicase-exonuclease AddAB subunit AddA; ATP-dependent DNA helicase.
 
 
 0.999
cpu_15530
ABC transporter permease.
 
     0.830
cpu_15520
ABC transporter ATP-binding protein.
       0.773
cpu_04870
Hypothetical protein.
  
     0.559
cpu_06790
Hypothetical protein.
  
     0.549
cpu_18450
Hypothetical protein.
 
     0.539
cpu_02470
single-stranded-DNA-specific exonuclease RecJ.
 
   
 0.531
cpu_15540
Hypothetical protein.
       0.517
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
   
 0.499
cpu_09060
Transcriptional regulator.
 
     0.495
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.