STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_15880Conserved hypothetical protein. (292 aa)    
Predicted Functional Partners:
cpu_15890
Hypothetical protein.
 
     0.956
cpu_16350
Hypothetical protein.
 
     0.792
cpu_15900
Bacillithiol biosynthesis deacetylase BshB1.
  
    0.753
cpu_15910
N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA.
       0.722
cpu_15870
Peptide ABC transporter permease.
  
    0.586
cpu_15920
Transcriptional repressor; Belongs to the Fur family.
  
    0.584
cpu_15930
Hypothetical protein.
       0.573
cpu_14500
Lysine decarboxylase.
   
 
 0.558
cpu_15860
Peptide ABC transporter permease.
       0.550
cpu_15940
DNA polymerase III subunit alpha.
       0.480
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.