Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
codY-2 | cpu_16380 | cpu_19700 | cpu_16380 | Transcriptional repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | 0.667 |
cpu_10930 | cpu_16380 | cpu_10930 | cpu_16380 | Hypothetical protein. | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | 0.724 |
cpu_16380 | codY-2 | cpu_16380 | cpu_19700 | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | Transcriptional repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family. | 0.667 |
cpu_16380 | cpu_10930 | cpu_16380 | cpu_10930 | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | Hypothetical protein. | 0.724 |
cpu_16380 | cpu_16390 | cpu_16380 | cpu_16390 | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | Hypothetical protein. | 0.788 |
cpu_16380 | cpu_16400 | cpu_16380 | cpu_16400 | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.766 |
cpu_16380 | cysS | cpu_16380 | cpu_16430 | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.671 |
cpu_16380 | mrnC | cpu_16380 | cpu_16420 | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.737 |
cpu_16380 | rpoA | cpu_16380 | cpu_23580 | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.696 |
cpu_16380 | rpoB | cpu_16380 | cpu_02600 | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.759 |
cpu_16380 | rpoC | cpu_16380 | cpu_02610 | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.796 |
cpu_16380 | rpoZ | cpu_16380 | cpu_22390 | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.775 |
cpu_16390 | cpu_16380 | cpu_16390 | cpu_16380 | Hypothetical protein. | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | 0.788 |
cpu_16390 | cpu_16400 | cpu_16390 | cpu_16400 | Hypothetical protein. | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.973 |
cpu_16390 | cysS | cpu_16390 | cpu_16430 | Hypothetical protein. | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.963 |
cpu_16390 | mrnC | cpu_16390 | cpu_16420 | Hypothetical protein. | Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.971 |
cpu_16400 | cpu_16380 | cpu_16400 | cpu_16380 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | RNA polymerase sigma-H factor; Belongs to the sigma-70 factor family. | 0.766 |
cpu_16400 | cpu_16390 | cpu_16400 | cpu_16390 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Hypothetical protein. | 0.973 |
cpu_16400 | cysS | cpu_16400 | cpu_16430 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.966 |
cpu_16400 | mrnC | cpu_16400 | cpu_16420 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.960 |
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