STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_20190Hypothetical protein. (266 aa)    
Predicted Functional Partners:
cpu_12820
Allophanate hydrolase.
  
    0.726
cpu_04220
MerR family transcriptional regulator.
 
  
 0.718
cpu_05710
GntR family transcriptional regulator.
 
  
 0.710
cpu_12840
Urea amidolyase.
  
    0.657
cpu_20210
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.617
cpu_20200
acyl-CoA dehydrogenase.
    
  0.585
cpu_21200
TRAP dicarboxylate transporter, DctP subunit.
 
   
 0.558
cpu_20260
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.514
cpu_20220
Hypothetical protein.
       0.485
cpu_20230
Hypothetical protein.
       0.479
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.