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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_20530Hypothetical protein. (200 aa)    
Predicted Functional Partners:
cpu_20540
Cell division protein MukB.
 
     0.963
cpu_20520
Hypothetical protein.
 
     0.962
cpu_20550
Hypothetical protein.
 
     0.960
cpu_20560
nucleotidyltransferase/HEPN domain protein.
 
     0.718
cpu_14650
Hypothetical protein.
  
     0.649
cpu_20510
Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.638
cpu_14610
Hypothetical protein.
  
     0.589
cpu_20500
DNA-binding protein.
 
     0.588
cpu_24730
Glycosyl transferase.
  
     0.562
cpu_21020
Hypothetical protein.
  
     0.558
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.