STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_216402-hydroxyglutaryl-CoA dehydratase. (316 aa)    
Predicted Functional Partners:
cpu_21620
Hypothetical protein.
     0.994
cpu_08390
Hypothetical protein.
     0.974
cpu_21630
CoA protein activase.
     0.971
cpu_08380
Hypothetical protein.
     0.914
cpu_12230
2-hydroxyglutaryl-CoA dehydratase.
  
 0.619
cpu_17700
2-hydroxyglutaryl-CoA dehydratase.
 
 0.604
cpu_12240
2-hydroxyglutaryl-CoA dehydratase.
 
 0.596
cpu_18640
3-hydroxyacyl-ACP dehydratase.
 
 0.584
cpu_01560
2-hydroxyglutaryl-CoA dehydratase.
  
 0.581
cpu_17690
Putative CoA dehydratase subunit/(R)-2-hydroxyglutaryl-CoA dehydratase activator.
  
0.567
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.