cpu_22170 protein (Carboxydothermus pertinax)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cpu_22170

Spore protein. (70 aa)

Predicted Functional Partners:

gpr

0.801

cpu_08420

0.774

cpu_08410

0.766

cpu_03000

0.762

cpu_22100

0.759

cpu_08040

0.757

cpu_25160

0.756

cpu_02980

0.753

cpu_08400

0.752

cpu_02990

0.750

Your Current Organism:

Carboxydothermus pertinax

NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cpu_02980	cpu_02990	cpu_02980	cpu_02990	Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.737
cpu_02980	cpu_03000	cpu_02980	cpu_03000	Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage II sporulation protein R.	0.903
cpu_02980	cpu_08040	cpu_02980	cpu_08040	Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.	0.782
cpu_02980	cpu_08400	cpu_02980	cpu_08400	Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage V sporulation protein AE.	0.774
cpu_02980	cpu_08410	cpu_02980	cpu_08410	Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage V sporulation protein AD.	0.774
cpu_02980	cpu_08420	cpu_02980	cpu_08420	Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage V sporulation protein AC.	0.774
cpu_02980	cpu_22100	cpu_02980	cpu_22100	Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Sporulation integral membrane protein YlbJ.	0.772
cpu_02980	cpu_22170	cpu_02980	cpu_22170	Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Spore protein.	0.753
cpu_02980	cpu_25160	cpu_02980	cpu_25160	Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Sporulation protein YabP.	0.772
cpu_02980	gpr	cpu_02980	cpu_22150	Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.	0.774
cpu_02990	cpu_02980	cpu_02990	cpu_02980	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.737
cpu_02990	cpu_03000	cpu_02990	cpu_03000	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage II sporulation protein R.	0.960
cpu_02990	cpu_08040	cpu_02990	cpu_08040	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.	0.801
cpu_02990	cpu_08400	cpu_02990	cpu_08400	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage V sporulation protein AE.	0.773
cpu_02990	cpu_08410	cpu_02990	cpu_08410	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage V sporulation protein AD.	0.781
cpu_02990	cpu_08420	cpu_02990	cpu_08420	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Stage V sporulation protein AC.	0.773
cpu_02990	cpu_22100	cpu_02990	cpu_22100	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Sporulation integral membrane protein YlbJ.	0.772
cpu_02990	cpu_22170	cpu_02990	cpu_22170	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Spore protein.	0.750
cpu_02990	cpu_25160	cpu_02990	cpu_25160	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Sporulation protein YabP.	0.766
cpu_02990	gpr	cpu_02990	cpu_22150	Sporulation sigma factor SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.	0.773