STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_23680N-acetylmuramoyl-L-alanine amidase CwlD. (241 aa)    
Predicted Functional Partners:
cpu_06960
N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.898
cpu_12510
Hypothetical protein.
 
  
 
0.811
cpu_12370
Rhomboid family intramembrane serine protease.
  
   0.683
cpu_04200
Peptidoglycan endopeptidase.
 
 
 0.656
cpu_01340
Toxin secretion/phage lysis holin.
  
    0.640
cpu_07240
Stage II sporulation protein D.
 
 0.585
cpu_01350
Prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase.
  
 
 0.531
cpu_23670
Hypothetical protein; Belongs to the Dps family.
     
 0.514
murA-2
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.467
cpu_23700
Hypothetical protein.
       0.457
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.