STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpu_25730ABC transporter permease. (396 aa)    
Predicted Functional Partners:
macB
Macrolide ABC transporter ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 0.999
cpu_14010
Macrolide ABC transporter ATP-binding protein.
 0.996
cpu_17800
ABC transporter ATP-binding protein.
 0.992
cpu_15520
ABC transporter ATP-binding protein.
 0.980
cpu_25710
Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.980
cpu_14020
Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.919
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
   
 0.840
cpu_25700
YIP1 family protein.
  
    0.807
cpu_03820
Hypothetical protein.
 
  
 0.746
cpu_00220
Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.733
Your Current Organism:
Carboxydothermus pertinax
NCBI taxonomy Id: 870242
Other names: C. pertinax, Carboxydothermus pertinax Yoneda et al. 2012, Carboxydothermus sp. Ug1, DSM 23698, NBRC 107576, strain Ug1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.