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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0C3JB60CPSF_A domain-containing protein. (1255 aa)    
Predicted Functional Partners:
A0A0C3JV82
Uncharacterized protein.
    
 0.999
A0A0C3KNG0
RING-type domain-containing protein.
    
 0.999
A0A0C3NQW0
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.999
A0A0C3JFC5
Uncharacterized protein.
    
 
 0.990
A0A0C3PI52
DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.
    
 0.990
A0A0C3JHD5
WD_REPEATS_REGION domain-containing protein.
    
 0.985
A0A0C3NAT3
PCI domain-containing protein.
    
 0.977
A0A0C3NX25
WD_REPEATS_REGION domain-containing protein.
    
 0.977
A0A0C3PVU8
Uncharacterized protein.
    
 0.977
A0A0C3JHR7
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.972
Your Current Organism:
Pisolithus tinctorius
NCBI taxonomy Id: 870435
Other names: P. tinctorius Marx 270, Pisolithus tinctorius ATCC MYA-4688, Pisolithus tinctorius Marx 270
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