STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD13239.1Outer membrane protein beta-barrel family protein. (356 aa)    
Predicted Functional Partners:
SFD13234.1
CarboxypepD_reg-like domain-containing protein.
     0.988
SFD13250.1
2-dehydro-3-deoxygluconokinase.
       0.538
SFC83602.1
Hypothetical protein.
  
   0.462
SFD23801.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
  
     0.448
Your Current Organism:
Algibacter pectinivorans
NCBI taxonomy Id: 870482
Other names: A. pectinivorans, Algibacter pectinivorans (Yi et al. 2011) Park et al. 2013, DSM 25730, Flavobacteriaceae bacterium JC2675, JCM 17107, KACC 14153, Pontirhabdus pectinivorans, Pontirhabdus pectinivorans Yi et al. 2011 emend. Park et al. 2013, strain JC2675
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