STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD38242.1Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family. (736 aa)    
Predicted Functional Partners:
SFC99470.1
Glutamate synthase (NADH) large subunit.
     
 0.935
SFD22025.1
Aconitase.
   
 
 0.914
SFD37539.1
Aconitase.
  
 
 0.909
SFD26110.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
  0.897
SFC89024.1
2-oxoglutarate dehydrogenase E1 component.
   
 
 0.893
SFC94018.1
Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
  0.878
SFC99453.1
Glutamate synthase (NADPH/NADH) small chain.
   
 
  0.877
SFC80955.1
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate.
  
  
 0.805
SFD38261.1
TonB-dependent Receptor Plug Domain.
      0.773
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
     
 0.649
Your Current Organism:
Algibacter pectinivorans
NCBI taxonomy Id: 870482
Other names: A. pectinivorans, Algibacter pectinivorans (Yi et al. 2011) Park et al. 2013, DSM 25730, Flavobacteriaceae bacterium JC2675, JCM 17107, KACC 14153, Pontirhabdus pectinivorans, Pontirhabdus pectinivorans Yi et al. 2011 emend. Park et al. 2013, strain JC2675
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