STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG29668.1Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (406 aa)    
Predicted Functional Partners:
SHG29812.1
Fe-S cluster assembly ATP-binding protein.
  
 0.998
SHG29952.1
Iron-regulated ABC transporter membrane component SufB.
 
 0.998
SHG29778.1
Iron-regulated ABC transporter permease protein SufD.
 
 0.997
SHG29038.1
Cysteine desulfuration protein SufE.
 0.996
SHG23722.1
NifU homolog involved in Fe-S cluster formation.
  
 0.972
SHG34068.1
FeS assembly SUF system protein.
    0.965
SHG50772.1
Endonuclease/Exonuclease/phosphatase family protein.
    
   0.852
SHG84364.1
Endonuclease/Exonuclease/phosphatase family protein; Non-canonical start codon; manually curated.
    
   0.852
SHG29988.1
Cysteine desulfurase.
    
 0.828
SHG29703.1
Yip1 domain-containing protein.
  
    0.807
Your Current Organism:
Cognatishimia maritima
NCBI taxonomy Id: 870908
Other names: C. maritima, CCUG 60021, DSM 28223, KCTC 23347, Thalassobius maritima, Thalassobius maritimus, Thalassobius maritimus Park et al. 2012, Thalassobius sp. GSW-6, Thalassobius sp. GSW-M6, strain GSW-M6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.