STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG50772.1Endonuclease/Exonuclease/phosphatase family protein. (400 aa)    
Predicted Functional Partners:
SHG28674.1
Cysteine desulfurase family protein, VC1184 subfamily.
    
   0.852
SHG29668.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.852
SHH60167.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.852
SHG50815.1
3-oxoadipate enol-lactonase.
       0.776
SHH01306.1
Protein of unknown function.
  
     0.715
SHG50692.1
2-haloacid dehalogenase.
       0.672
SHG50861.1
Hypothetical protein.
       0.664
SHG50729.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.651
SHG50901.1
MFS transporter, DHA1 family, tetracycline resistance protein.
       0.587
SHG86580.1
META domain-containing protein.
  
     0.573
Your Current Organism:
Cognatishimia maritima
NCBI taxonomy Id: 870908
Other names: C. maritima, CCUG 60021, DSM 28223, KCTC 23347, Thalassobius maritima, Thalassobius maritimus, Thalassobius maritimus Park et al. 2012, Thalassobius sp. GSW-6, Thalassobius sp. GSW-M6, strain GSW-M6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.