STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG62743.1Hypothetical protein. (135 aa)    
Predicted Functional Partners:
SHG62789.1
Hypothetical protein.
       0.590
SHG62832.1
Hypothetical protein.
       0.501
SHG62490.1
General L-amino acid transport system permease protein.
       0.474
SHG62545.1
General L-amino acid transport system permease protein.
       0.474
SHG62596.1
General L-amino acid transport system ATP-binding protein.
       0.474
SHG62646.1
L-threonine aldolase.
       0.474
SHG62690.1
D-serine deaminase, pyridoxal phosphate-dependent.
       0.474
SHG62439.1
General L-amino acid transport system substrate-binding protein.
       0.400
Your Current Organism:
Cognatishimia maritima
NCBI taxonomy Id: 870908
Other names: C. maritima, CCUG 60021, DSM 28223, KCTC 23347, Thalassobius maritima, Thalassobius maritimus, Thalassobius maritimus Park et al. 2012, Thalassobius sp. GSW-6, Thalassobius sp. GSW-M6, strain GSW-M6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.