STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG89215.1Protein of unknown function. (168 aa)    
Predicted Functional Partners:
SHG23722.1
NifU homolog involved in Fe-S cluster formation.
  
     0.765
atpE
ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
     0.746
SHG53727.1
GcrA cell cycle regulator.
  
     0.729
SHG23574.1
Protein of unknown function.
  
     0.717
SHG55562.1
Intracellular septation protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
 
     0.714
SHH43345.1
Heat shock protein HspQ.
  
     0.687
SHH45374.1
YggT family protein.
  
     0.662
SHG25448.1
Hypothetical protein.
  
     0.634
SHG89175.1
NlpC/P60 family protein.
  
     0.621
SHG96908.1
Lipopolysaccharide export system protein LptA.
  
     0.603
Your Current Organism:
Cognatishimia maritima
NCBI taxonomy Id: 870908
Other names: C. maritima, CCUG 60021, DSM 28223, KCTC 23347, Thalassobius maritima, Thalassobius maritimus, Thalassobius maritimus Park et al. 2012, Thalassobius sp. GSW-6, Thalassobius sp. GSW-M6, strain GSW-M6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.