STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG95322.1Pilus assembly protein CpaF. (464 aa)    
Predicted Functional Partners:
SHG95366.1
Tight adherence protein B.
 
  
 0.979
SHG95409.1
Tight adherence protein C.
 
  
 0.967
SHG95223.1
Pilus assembly protein CpaE.
 
  
 0.955
SHG95025.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
  
 0.928
SHG94978.1
Pilus assembly protein CpaB.
 
  
 0.922
SHG56637.1
Tight adherence protein B.
 
  
 0.915
SHG56670.1
Type II secretion system protein F (GspF).
 
  
 0.886
SHG56473.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
  
 0.849
SHG56437.1
Pilus assembly protein CpaB.
 
  
 0.842
SHG56557.1
Pilus assembly protein CpaE.
 
  
 0.837
Your Current Organism:
Cognatishimia maritima
NCBI taxonomy Id: 870908
Other names: C. maritima, CCUG 60021, DSM 28223, KCTC 23347, Thalassobius maritima, Thalassobius maritimus, Thalassobius maritimus Park et al. 2012, Thalassobius sp. GSW-6, Thalassobius sp. GSW-M6, strain GSW-M6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.