STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH17730.12-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase. (355 aa)    
Predicted Functional Partners:
SHH17564.1
DNA-binding transcriptional regulator, GntR family.
 
   
 0.718
SHG93159.1
2-oxoisovalerate dehydrogenase E1 component.
  
 
 0.588
SHH17646.1
D-xylose transport system ATP-binding protein.
  
    0.558
SHH17772.1
L-fucose mutarotase; Belongs to the RbsD / FucU family.
       0.557
SHH17689.1
D-xylose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.553
SHG61551.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 
 0.544
SHH54074.1
Predicted dehydrogenase.
  
 
 0.542
SHH17605.1
D-xylose transport system substrate-binding protein.
       0.535
SHG61828.1
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 
 0.523
SHH14856.1
DNA-binding transcriptional regulator, GntR family.
  
     0.510
Your Current Organism:
Cognatishimia maritima
NCBI taxonomy Id: 870908
Other names: C. maritima, CCUG 60021, DSM 28223, KCTC 23347, Thalassobius maritima, Thalassobius maritimus, Thalassobius maritimus Park et al. 2012, Thalassobius sp. GSW-6, Thalassobius sp. GSW-M6, strain GSW-M6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.