STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH81287.1TRAP transporter, DctM subunit. (431 aa)    
Predicted Functional Partners:
SHH81256.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.996
SHH81225.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.990
SHH81310.1
Sensor histidine kinase inhibitor, KipI family.
       0.773
SHH81340.1
Allophanate hydrolase.
       0.773
SHH13905.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
 0.770
SHH87201.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.758
SHG62010.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.743
SHH13131.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.734
SHH13868.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.727
pxpA
UPF0271 protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.727
Your Current Organism:
Cognatishimia maritima
NCBI taxonomy Id: 870908
Other names: C. maritima, CCUG 60021, DSM 28223, KCTC 23347, Thalassobius maritima, Thalassobius maritimus, Thalassobius maritimus Park et al. 2012, Thalassobius sp. GSW-6, Thalassobius sp. GSW-M6, strain GSW-M6
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