Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_03825Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)    
Predicted Functional Partners:
BG60_10275
Nitrogen regulatory protein P-II 1; Indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.996
BG60_12995
Nitrogen regulatory protein P-II 1; Indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.981
BG60_10585
Nitrogen regulatory protein P-II; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.956
BG60_23065
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.817
BG60_15980
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.814
BG60_21040
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.794
BG60_06825
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.791
BG60_28640
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.755
BG60_35650
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.714
BG60_20290
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.712
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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