Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_04810UDP diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)    
Predicted Functional Partners:
BG60_04805
Phosphatidate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.990
BG60_04800
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.987
BG60_37625
Geranyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.970
BG60_04795
Zinc metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.961
BG60_04815
Ribosome-recycling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.960
BG60_32055
Octaprenyl diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.960
BG60_29920
UDP pyrophosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.937
BG60_31540
UDP pyrophosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.937
BG60_04820
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.932
BG60_32095
proline--tRNA ligase; Catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.888
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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